TraC: Transcript Consensus

TraC is a tool for finding shared sequences in splice variants of a single gene or a set of closely related genes. Splice variants and sequences can be drawn from the Ensembl and the NCBI RefSeq database. The tool is described in a manuscript found here. For best performance please use Chrome, Firefox, or Safari.

For a Demo Click here

Citation: Azhir et al. (2018) Genomics. Interactive web-based identification and visualization of transcript shared sequences [Pubmed: 29763731]

Alaleh Azhir, Louis-Henri Merino, David Nauen

Step 1: Transcript entry or upload

Select a transcript by selecting a database, gene and species:
Database:

Ensembl NCBI RefSeq

Assembly: GRCh38 GRCh37 Species: Gene:

Please list the accession numbers (separated by comma):

And/Or enter the sequences below:

Name: Sequence: Exon Information:

Step 2: Settings

Find Shared Sequences:
Please enter the minimum length of a shared sequence:
Weight shared sequence display by:

Length Number of transcripts in which it occurs

Or check the input sequences for a specific subsequence:
Check to see if this subsequence is present among any of the input transcripts: